STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata22Spermatogenesis associated 22. (381 aa)    
Predicted Functional Partners:
meiob
Meiosis specific with OB-fold.
      
 0.557
hsf2bp
Heat shock transcription factor 2 binding protein.
      
 0.529
syce3
Synaptonemal complex central element protein 3.
      
 0.504
sycp3
Synaptonemal complex protein 3.
      
 0.483
spata20
Spermatogenesis associated 20.
      
 0.475
cdx4
Caudal type homeobox 4.
      
 0.443
lrrc42
Leucine rich repeat containing 42.
      
 0.437
hfm1
Helicase for meiosis 1.
      
 0.418
spata17
Spermatogenesis associated 17.
      
 0.416
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.412
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.