STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114861777SH2 domain-containing protein 3C-like. (797 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.691
bcar1
BCAR1 scaffold protein, Cas family member.
    
 0.690
nedd9
Neural precursor cell expressed, developmentally down-regulated 9.
    
 0.690
eci2
enoyl-CoA delta isomerase 2.
    
  0.644
wdr90
WD repeat domain 90.
    
 0.623
gak
Cyclin G associated kinase.
   
 0.609
mars1
methionyl-tRNA synthetase 1.
   
 0.584
pla2g4a
Phospholipase A2 group IVA.
    
 0.580
traf7
TNF receptor associated factor 7.
    
  0.564
ubxn7
UBX domain protein 7.
    
 0.562
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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