STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata5l1Spermatogenesis associated 5 like 1. (717 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.999
nsfl1c
NSFL1 cofactor.
   
 0.977
ubxn6
UBX domain protein 6.
    
 0.970
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.970
derl1
Derlin 1.
   
 0.969
ubxn1
UBX domain protein 1.
   
 0.968
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 0.966
faf1
Fas associated factor 1.
   
 0.963
yod1
YOD1 deubiquitinase.
   
 0.958
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 0.955
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.