STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855578Class E basic helix-loop-helix protein 40-like. (384 aa)    
Predicted Functional Partners:
bhlhe41
Basic helix-loop-helix family member e41.
  
0.874
fancf
FA complementation group F.
    
  0.638
fancg
FA complementation group G.
    
  0.638
fancl
FA complementation group L.
    
  0.638
fancc
FA complementation group C.
    
  0.638
per1
Period circadian regulator 1.
   
 0.561
fance
FA complementation group E.
    
  0.536
rpl10a
Ribosomal protein L10a.
    
  0.536
ENSBSLP00000012764
annotation not available
    
  0.536
nr1d2
Nuclear receptor subfamily 1 group D member 2.
   
 
 0.535
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.