STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114867280T-box transcription factor TBX5-A-like. (525 aa)    
Predicted Functional Partners:
nkx2-5
NK2 homeobox 5.
   
 
 0.890
yap1
Yes associated protein 1.
    
 0.773
hand2
Heart and neural crest derivatives expressed 2.
   
 0.644
gata4
GATA binding protein 4.
   
 0.636
ctnnb1
Catenin beta 1.
    
 0.558
LOC114858354
Natriuretic peptides A-like.
     
 0.542
mfrp
Membrane frizzled-related protein.
    
 0.534
gata6
GATA binding protein 6.
   
 0.530
ENSBSLP00000041372
CUB domain containing protein 2.
   
 0.526
pcolce2
Procollagen C-endopeptidase enhancer 2.
   
 0.522
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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