STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpm7Transient receptor potential cation channel subfamily M member 7. (1911 aa)    
Predicted Functional Partners:
trpv4
Transient receptor potential cation channel subfamily V member 4.
   
 
 0.853
LOC114869148
Transient receptor potential cation channel subfamily V member 1-like.
   
 
 0.848
trpm2
Transient receptor potential cation channel subfamily M member 2.
     
0.846
nudt9
Nudix hydrolase 9.
 
   
 0.835
MLKL
Mixed lineage kinase domain-like protein.
     
 0.786
LOC114857531
Mixed lineage kinase domain-like protein.
     
 0.786
LOC114857530
Mixed lineage kinase domain-like protein.
     
 0.786
rfwd3
Ring finger and WD repeat domain 3.
     
 0.672
scn2b
Sodium voltage-gated channel beta subunit 2.
     
 0.627
scn3b
Sodium voltage-gated channel beta subunit 3.
     
 0.621
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.