ENSBSLP00000027833 protein (Betta splendens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSBSLP00000027833

annotation not available (303 aa)

Predicted Functional Partners:

rad51d

0.986

rad51b

0.968

knl1

0.962

xrcc3

0.955

rad51

0.922

ENSBSLP00000034562

0.827

mre11

0.780

brca1

0.753

exo1

0.752

mus81

0.744

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBSLP00000027833	ENSBSLP00000034562	ENSBSLP00000027833	ENSBSLP00000034562	annotation not available	BRCA2 DNA repair associated.	0.827
ENSBSLP00000027833	brca1	ENSBSLP00000027833	ENSBSLP00000034611	annotation not available	BRCA1 DNA repair associated.	0.753
ENSBSLP00000027833	exo1	ENSBSLP00000027833	ENSBSLP00000051143	annotation not available	Exonuclease 1.	0.752
ENSBSLP00000027833	knl1	ENSBSLP00000027833	ENSBSLP00000037319	annotation not available	Kinetochore scaffold 1.	0.962
ENSBSLP00000027833	mre11	ENSBSLP00000027833	ENSBSLP00000024958	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.780
ENSBSLP00000027833	mus81	ENSBSLP00000027833	ENSBSLP00000025985	annotation not available	MUS81 structure-specific endonuclease subunit.	0.744
ENSBSLP00000027833	rad51	ENSBSLP00000027833	ENSBSLP00000023482	annotation not available	RAD51 recombinase.	0.922
ENSBSLP00000027833	rad51b	ENSBSLP00000027833	ENSBSLP00000027100	annotation not available	RAD51 paralog B.	0.968
ENSBSLP00000027833	rad51d	ENSBSLP00000027833	ENSBSLP00000034558	annotation not available	RAD51 paralog D.	0.986
ENSBSLP00000027833	xrcc3	ENSBSLP00000027833	ENSBSLP00000044905	annotation not available	X-ray repair cross complementing 3.	0.955
ENSBSLP00000034562	ENSBSLP00000027833	ENSBSLP00000034562	ENSBSLP00000027833	BRCA2 DNA repair associated.	annotation not available	0.827
ENSBSLP00000034562	brca1	ENSBSLP00000034562	ENSBSLP00000034611	BRCA2 DNA repair associated.	BRCA1 DNA repair associated.	0.996
ENSBSLP00000034562	exo1	ENSBSLP00000034562	ENSBSLP00000051143	BRCA2 DNA repair associated.	Exonuclease 1.	0.877
ENSBSLP00000034562	knl1	ENSBSLP00000034562	ENSBSLP00000037319	BRCA2 DNA repair associated.	Kinetochore scaffold 1.	0.989
ENSBSLP00000034562	mre11	ENSBSLP00000034562	ENSBSLP00000024958	BRCA2 DNA repair associated.	MRE11 homolog, double strand break repair nuclease.	0.838
ENSBSLP00000034562	mus81	ENSBSLP00000034562	ENSBSLP00000025985	BRCA2 DNA repair associated.	MUS81 structure-specific endonuclease subunit.	0.869
ENSBSLP00000034562	rad51	ENSBSLP00000034562	ENSBSLP00000023482	BRCA2 DNA repair associated.	RAD51 recombinase.	0.999
ENSBSLP00000034562	rad51b	ENSBSLP00000034562	ENSBSLP00000027100	BRCA2 DNA repair associated.	RAD51 paralog B.	0.987
ENSBSLP00000034562	rad51d	ENSBSLP00000034562	ENSBSLP00000034558	BRCA2 DNA repair associated.	RAD51 paralog D.	0.987
ENSBSLP00000034562	xrcc3	ENSBSLP00000034562	ENSBSLP00000044905	BRCA2 DNA repair associated.	X-ray repair cross complementing 3.	0.976