STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000027868Procollagen, type V, alpha 1. (1296 aa)    
Predicted Functional Partners:
tep1
Telomerase associated protein 1.
    
 0.588
LOC114855982
Complement C1q subcomponent subunit C-like.
  
 
0.586
LOC114847453
Collagen alpha-2(VI) chain-like.
  
 
0.531
col6a2
Collagen type VI alpha 2 chain.
  
 
0.529
COL22A1
Collagen type XXII alpha 1 chain.
  
 
0.497
ENSBSLP00000050298
Collagen, type VI, alpha 1.
  
0.487
rptor
Regulatory associated protein of MTOR complex 1.
    
 0.484
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.474
LOC114848581
Histone-lysine N-methyltransferase SETDB2-like.
    
  0.469
setdb1
SET domain bifurcated histone lysine methyltransferase 1.
    
  0.469
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.