STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rae1Ribonucleic acid export 1. (394 aa)    
Predicted Functional Partners:
nup98
Nucleoporin 98.
   
 0.999
nup85
Nucleoporin 85.
   
 0.996
nup155
Nucleoporin 155.
    
 0.994
tpr
Translocated promoter region, nuclear basket protein.
    
 0.993
LOC114846828
ranBP2-like and GRIP domain-containing protein 3.
   
 0.993
nxf1
Nuclear RNA export factor 1.
    
 0.992
nup214
Nucleoporin 214.
    
 0.992
nup50
Nucleoporin 50.
   
 0.990
nup210
Nucleoporin 210.
    
 0.986
gle1
GLE1 RNA export mediator.
   
 0.983
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.