STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855758RIPOR family member 3-like. (1044 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.966
frem1
FRAS1 related extracellular matrix 1.
    
 0.810
gle1
GLE1 RNA export mediator.
    
 0.701
rps28
Ribosomal protein S28.
   
  0.690
ENSBSLP00000056556
Ribosomal protein S15.
   
  0.686
rps11
Ribosomal protein S11.
   
 0.673
rps19
Ribosomal protein S19.
   
 0.669
rps24
Ribosomal protein S24.
   
 0.667
rps29
Ribosomal protein S29.
   
  0.663
mrps15
Mitochondrial ribosomal protein S15.
   
 0.652
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.