STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcgf5Polycomb group ring finger 5. (238 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.982
rnf2
Ring finger protein 2.
    
 0.982
PCGF3
Polycomb group ring finger 3.
    
0.971
auts2
Activator of transcription and developmental regulator AUTS2.
    
 0.971
skp1
S-phase kinase associated protein 1.
    
 0.970
CBX2
Chromobox protein homolog 2-like.
    
 0.965
LOC114860152
F-box/LRR-repeat protein 19-like.
   
 0.959
kdm2a
Lysine demethylase 2A.
   
 0.959
LOC114866505
Lysine-specific demethylase 2B-like.
   
 0.959
LOC114851203
Lysine-specific demethylase 2A-like.
   
 0.959
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.