tbxa2r protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tbxa2r

Thromboxane A2 receptor. (365 aa)

Predicted Functional Partners:

LOC114861905

0.938

LOC114861667

0.938

LOC114848961

0.938

LOC114860741

0.904

LOC114845814

0.904

gna12

0.904

LOC114854338

0.879

aamp

0.810

LOC114859789

0.728

gng10

0.728

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114845814	LOC114848961	ENSBSLP00000029506	ENSBSLP00000052734	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(q) subunit alpha-like.	0.661
LOC114845814	LOC114854338	ENSBSLP00000029506	ENSBSLP00000008871	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-11-like.	0.739
LOC114845814	LOC114859789	ENSBSLP00000029506	ENSBSLP00000008956	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13-like.	0.838
LOC114845814	LOC114860741	ENSBSLP00000029506	ENSBSLP00000023225	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.811
LOC114845814	LOC114861667	ENSBSLP00000029506	ENSBSLP00000039439	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein G(q) subunit alpha.	0.661
LOC114845814	LOC114861905	ENSBSLP00000029506	ENSBSLP00000039404	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-14-like.	0.662
LOC114845814	gng10	ENSBSLP00000029506	ENSBSLP00000021887	Guanine nucleotide-binding protein subunit alpha-13-like.	G protein subunit gamma 10.	0.845
LOC114845814	tbxa2r	ENSBSLP00000029506	ENSBSLP00000028411	Guanine nucleotide-binding protein subunit alpha-13-like.	Thromboxane A2 receptor.	0.904
LOC114848961	LOC114845814	ENSBSLP00000052734	ENSBSLP00000029506	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.661
LOC114848961	LOC114854338	ENSBSLP00000052734	ENSBSLP00000008871	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-11-like.	0.806
LOC114848961	LOC114859789	ENSBSLP00000052734	ENSBSLP00000008956	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13-like.	0.897
LOC114848961	LOC114860741	ENSBSLP00000052734	ENSBSLP00000023225	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.662
LOC114848961	LOC114861667	ENSBSLP00000052734	ENSBSLP00000039439	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein G(q) subunit alpha.	0.839
LOC114848961	LOC114861905	ENSBSLP00000052734	ENSBSLP00000039404	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Guanine nucleotide-binding protein subunit alpha-14-like.	0.530
LOC114848961	gna12	ENSBSLP00000052734	ENSBSLP00000034660	Guanine nucleotide-binding protein G(q) subunit alpha-like.	G protein subunit alpha 12.	0.662
LOC114848961	gng10	ENSBSLP00000052734	ENSBSLP00000021887	Guanine nucleotide-binding protein G(q) subunit alpha-like.	G protein subunit gamma 10.	0.847
LOC114848961	tbxa2r	ENSBSLP00000052734	ENSBSLP00000028411	Guanine nucleotide-binding protein G(q) subunit alpha-like.	Thromboxane A2 receptor.	0.938
LOC114854338	LOC114845814	ENSBSLP00000008871	ENSBSLP00000029506	Guanine nucleotide-binding protein subunit alpha-11-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.739
LOC114854338	LOC114848961	ENSBSLP00000008871	ENSBSLP00000052734	Guanine nucleotide-binding protein subunit alpha-11-like.	Guanine nucleotide-binding protein G(q) subunit alpha-like.	0.806
LOC114854338	LOC114859789	ENSBSLP00000008871	ENSBSLP00000008956	Guanine nucleotide-binding protein subunit alpha-11-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13-like.	0.945