STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114849260POU domain, class 3, transcription factor 2-like. (468 aa)    
Predicted Functional Partners:
LOC114861426
snRNA-activating protein complex subunit 4-like.
    
  0.622
gtf2b
General transcription factor IIB.
    
 0.560
LOC114869055
Transcription initiation factor TFIID subunit 9-like.
     
 0.536
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.528
gtf2e1
General transcription factor IIE subunit 1.
    
  0.528
bsx
Brain specific homeobox.
   
 0.523
LOC114842051
Homeobox protein vent1-like.
   
 0.523
snapc3
Small nuclear RNA activating complex polypeptide 3.
   
 
  0.506
LOC114865463
Sal-like protein 3.
    
 0.499
sall1
Spalt like transcription factor 1.
    
 0.499
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.