STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmga2High mobility group AT-hook 2. (130 aa)    
Predicted Functional Partners:
smad2
SMAD family member 2.
   
 0.696
SMAD3
Mothers against decapentaplegic homolog 3.
   
 0.696
smad3
SMAD family member 3.
   
 0.696
LOC114862382
Mothers against decapentaplegic homolog 2.
   
 0.696
smad1
SMAD family member 1.
   
 0.673
LOC114864524
Mothers against decapentaplegic homolog 5.
   
 0.673
smad9
SMAD family member 9.
   
 0.673
hmga1
High mobility group AT-hook 1.
   
 
 0.670
LOC114862819
Mothers against decapentaplegic homolog 4-like.
    
 0.636
SMAD4
Mothers against decapentaplegic homolog 4-like.
    
 0.636
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.