STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (939 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.935
AMFR
Autocrine motility factor receptor.
    
 0.878
LOC114857283
E3 ubiquitin-protein ligase AMFR-like.
    
 0.877
syvn1
Synoviolin 1.
    
 0.877
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.875
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.871
LOC114856895
CCR4-NOT transcription complex subunit 2.
    
 0.871
LOC114844259
E3 ubiquitin-protein ligase MARCH6-like.
  
  
 
0.839
ENSBSLP00000041366
FA core complex associated protein 100.
    
 0.788
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.788
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.