STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1ccProtein phosphatase 1 catalytic subunit gamma. (336 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
 
 
 0.961
ppp1r11
Protein phosphatase 1 regulatory inhibitor subunit 11.
    
 0.953
shoc2
SHOC2 leucine rich repeat scaffold protein.
    
 0.951
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.943
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.942
WDR33
WD repeat domain 33.
   
 0.938
rb1
RB transcriptional corepressor 1.
   
 0.936
eif2s1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.934
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.932
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.932
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.