STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc37Tetratricopeptide repeat domain 37. (1569 aa)    
Predicted Functional Partners:
skiv2l
Ski2 like RNA helicase.
   
 0.999
wdr61
WD repeat domain 61.
    
 0.999
mtrex
Mtr4 exosome RNA helicase.
   
 0.980
ipo7
Importin 7.
   
 0.970
ipo8
Importin 8.
   
 0.970
exosc9
Exosome component 9.
    
 0.940
tep1
Telomerase associated protein 1.
    
 0.934
hbs1l
HBS1 like translational GTPase.
    
 0.912
gemin5
Gem nuclear organelle associated protein 5.
    
 0.905
LOC114852026
WD repeat, SAM and U-box domain-containing protein 1-like.
    
 0.905
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.