STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000029498Pogo transposable element derived with ZNF domain b. (1765 aa)    
Predicted Functional Partners:
gtf3c5
General transcription factor IIIC subunit 5.
   
 0.949
LOC114860313
SUMO-conjugating enzyme UBC9-like.
    
  0.925
kctd2
Potassium channel tetramerization domain containing 2.
    
  0.925
ube2i
Ubiquitin conjugating enzyme E2 I.
    
  0.925
PSIP1
PC4 and SFRS1 interacting protein 1.
    
 
 0.891
brf1
BRF1 RNA polymerase III transcription initiation factor subunit.
   
 
  0.820
brf2
BRF2 RNA polymerase III transcription initiation factor subunit.
   
 
  0.820
LOC114849404
Transcription factor IIIB 90 kDa subunit-like.
   
 
  0.820
mphosph8
M-phase phosphoprotein 8.
  
 0.750
gtf3c3
General transcription factor IIIC subunit 3.
   
 0.747
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.