STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nvlNuclear VCP like. (825 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.998
ubxn7
UBX domain protein 7.
   
 0.991
gnl2
G protein nucleolar 2.
   
 0.991
noc3l
NOC3 like DNA replication regulator.
   
 
 0.991
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.990
gtpbp4
GTP binding protein 4.
   
 0.990
wdr12
WD repeat domain 12.
   
 0.988
gnl3l
G protein nucleolar 3 like.
   
 0.988
brix1
Biogenesis of ribosomes BRX1.
   
 0.987
LOC114867891
WD repeat-containing protein 74-like.
   
 0.987
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.