STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPARTSpartin. (567 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.904
LOC114868452
Spartin-like.
  
  
 
0.845
snx15
Sorting nexin 15.
      
 0.540
LOC114857041
NEDD4-like E3 ubiquitin-protein ligase WWP2.
    
 
 0.522
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.522
LOC114858841
E3 ubiquitin-protein ligase Itchy-like.
    
 
 0.522
LOC114855782
E3 ubiquitin-protein ligase Itchy-like.
    
 
 0.522
spg11
SPG11 vesicle trafficking associated, spatacsin.
      
 0.440
eps15
Epidermal growth factor receptor pathway substrate 15.
    
 
 0.439
EPS15L1
Epidermal growth factor receptor pathway substrate 15 like 1.
    
 
 0.439
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.