STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpaXPA, DNA damage recognition and repair factor. (275 aa)    
Predicted Functional Partners:
ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit.
    
 0.997
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
    
 0.997
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.996
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.995
ercc6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.995
fancm
FA complementation group M.
    
 0.994
gtf2h1
General transcription factor IIH subunit 1.
    
 0.990
gtf2h3
General transcription factor IIH subunit 3.
   
 0.988
gtf2h4
General transcription factor IIH subunit 4.
    
 0.986
ENSBSLP00000004319
FA core complex associated protein 24.
    
 0.984
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.