STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nalcnSodium leak channel, non-selective. (1745 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.999
FAM155A
Family with sequence similarity 155 member A.
   
 
 0.955
wdr35
WD repeat domain 35.
    
 0.811
IFT122
Intraflagellar transport 122.
   
 0.809
LOC114865310
Sodium channel subunit beta-1-like.
    
 0.808
LOC114843159
Sodium channel subunit beta-1-like.
    
 0.808
LOC114860516
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 0.806
ift140
Intraflagellar transport 140.
    
 0.804
scn2b
Sodium voltage-gated channel beta subunit 2.
   
 0.802
CACNB2
Calcium voltage-gated channel auxiliary subunit beta 2.
   
 0.789
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.