STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114843959CTD small phosphatase-like protein. (274 aa)    
Predicted Functional Partners:
gtf2f1
General transcription factor IIF subunit 1.
   
 0.861
timm23
Translocase of inner mitochondrial membrane 23.
    
 0.803
polr2c
RNA polymerase II subunit C.
    
 0.799
polr2g
RNA polymerase II subunit G.
    
 0.780
polr2d
RNA polymerase II subunit D.
    
 0.746
timm21
Translocase of inner mitochondrial membrane 21.
    
 0.725
polr2j
RNA polymerase II subunit J.
    
 0.714
polr2f
RNA polymerase II subunit F.
   
 0.702
POLR2E
RNA polymerase II subunit E.
   
 0.690
gtf2f2
General transcription factor IIF subunit 2.
   
 0.668
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.