STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114853369Ectoderm-neural cortex protein 1-like. (589 aa)    
Predicted Functional Partners:
LOC114868724
Cullin-3.
    
 0.838
CUL3
Cullin-3-like.
    
 0.838
klhl7
Kelch like family member 7.
  
 
 
0.811
kbtbd8
Kelch repeat and BTB domain containing 8.
  
 
0.808
klhl22
Kelch like family member 22.
  
 
 
0.789
GAN
Gigaxonin.
  
 
 
0.783
klhl8
Kelch like family member 8.
  
 
 
0.782
klhl24
Kelch like family member 24.
  
 
 
0.780
klhl20
Kelch like family member 20.
  
 
 
0.777
klhl13
Kelch like family member 13.
  
 
 
0.768
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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