lsm7 protein (Betta splendens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lsm7

LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (112 aa)

Predicted Functional Partners:

lsm6

0.999

lsm2

0.999

lsm5

0.999

sart3

0.999

snrpd2

0.999

sart1

0.999

lsm4

0.999

lsm8

0.999

prpf4

0.999

snu13

0.999

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lsm2	lsm4	ENSBSLP00000000773	ENSBSLP00000022904	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm5	ENSBSLP00000000773	ENSBSLP00000005106	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm6	ENSBSLP00000000773	ENSBSLP00000000479	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm7	ENSBSLP00000000773	ENSBSLP00000031023	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm2	lsm8	ENSBSLP00000000773	ENSBSLP00000023676	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
lsm2	prpf4	ENSBSLP00000000773	ENSBSLP00000027899	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 4.	0.997
lsm2	sart1	ENSBSLP00000000773	ENSBSLP00000015882	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.999
lsm2	sart3	ENSBSLP00000000773	ENSBSLP00000005903	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.999
lsm2	snrpd2	ENSBSLP00000000773	ENSBSLP00000007441	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
lsm2	snu13	ENSBSLP00000000773	ENSBSLP00000043056	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein 13.	0.995
lsm4	lsm2	ENSBSLP00000022904	ENSBSLP00000000773	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	lsm5	ENSBSLP00000022904	ENSBSLP00000005106	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	lsm6	ENSBSLP00000022904	ENSBSLP00000000479	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	lsm7	ENSBSLP00000022904	ENSBSLP00000031023	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm4	lsm8	ENSBSLP00000022904	ENSBSLP00000023676	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM8 homolog, U6 small nuclear RNA associated.	0.999
lsm4	prpf4	ENSBSLP00000022904	ENSBSLP00000027899	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	pre-mRNA processing factor 4.	0.996
lsm4	sart1	ENSBSLP00000022904	ENSBSLP00000015882	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.999
lsm4	sart3	ENSBSLP00000022904	ENSBSLP00000005903	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.999
lsm4	snrpd2	ENSBSLP00000022904	ENSBSLP00000007441	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
lsm4	snu13	ENSBSLP00000022904	ENSBSLP00000043056	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	Small nuclear ribonucleoprotein 13.	0.994