STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSBSLP00000031201annotation not available (596 aa)    
Predicted Functional Partners:
prdm16
PR/SET domain 16.
    
0.929
kdm1a
Lysine demethylase 1A.
    
 0.925
KDM1B
Lysine demethylase 1B.
    
  0.829
LOC114850751
Zinc finger protein 536-like.
 
  
   0.808
dap3
Death associated protein 3.
  
 
  0.581
ENSBSLP00000048337
annotation not available
    
  0.578
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.564
hepacam2
HEPACAM family member 2.
  
 
   0.546
LOC114864018
C-terminal-binding protein 1-like.
    
 
 0.543
ctbp1
C-terminal binding protein 1.
    
 
 0.543
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.