STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plod1Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1. (754 aa)    
Predicted Functional Partners:
LOC114866793
Procollagen galactosyltransferase 2-like.
   
0.887
LOC114851484
Procollagen galactosyltransferase 1-like.
   
0.887
pgls
6-phosphogluconolactonase.
   
0.887
LOC114853001
Procollagen galactosyltransferase 2-like.
   
0.887
suv39h1
Suppressor of variegation 3-9 homolog 1.
    
  0.847
smyd3
SET and MYND domain containing 3.
   
 0.846
LOC114869004
Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like.
    
 0.843
nsd3
Nuclear receptor binding SET domain protein 3.
    
 0.842
nsd2
Nuclear receptor binding SET domain protein 2.
    
 0.842
LOC114864545
Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like.
    
 0.838
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.