STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPNE8Copine-8. (549 aa)    
Predicted Functional Partners:
rnaseh2b
Ribonuclease H2 subunit B.
   
 0.812
rnaseh2a
Ribonuclease H2 subunit A.
   
 0.785
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.533
pi4ka
Phosphatidylinositol 4-kinase alpha.
     
 0.498
LOC114866086
Phosphatidylinositol 4-kinase beta-like.
     
 0.452
LOC114843221
Phosphatidylinositol 4-kinase beta-like.
     
 0.452
FIG4
FIG4 phosphoinositide 5-phosphatase.
     
 0.443
capzb
Capping actin protein of muscle Z-line subunit beta.
     
 0.423
pcsk9
Proprotein convertase subtilisin/kexin type 9.
     
 0.422
LOC114843239
Phosphatidylinositide phosphatase SAC1-B.
     
 0.412
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.