STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114846511ORM1-like protein 3. (153 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
    
 0.975
sptssa
Serine palmitoyltransferase small subunit A.
    
 0.930
sptlc2
Serine palmitoyltransferase long chain base subunit 2.
    
 0.842
sptlc3
Serine palmitoyltransferase long chain base subunit 3.
    
 0.842
ism1
Isthmin 1.
    
 0.842
LOC114848341
Serine palmitoyltransferase 2-like.
    
 0.842
ism2
Isthmin 2.
    
 0.813
ENSBSLP00000024484
Serine palmitoyltransferase, small subunit B.
     
 0.789
LOC114843239
Phosphatidylinositide phosphatase SAC1-B.
    
 0.737
sacm1l
SAC1 like phosphatidylinositide phosphatase.
    
 0.737
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.