STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfap1Microfibril associated protein 1. (441 aa)    
Predicted Functional Partners:
sf3b3
Splicing factor 3b subunit 3.
    
 0.999
zmat2
Zinc finger matrin-type 2.
   
 0.999
prpf6
pre-mRNA processing factor 6.
   
 0.999
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.999
prpf8
pre-mRNA processing factor 8.
   
 0.999
prpf38a
pre-mRNA processing factor 38A.
   
 0.999
sf3a3
Splicing factor 3a subunit 3.
   
 0.999
prpf31
pre-mRNA processing factor 31.
   
 0.999
sf3a1
Splicing factor 3a subunit 1.
   
 0.999
sf3b1
Splicing factor 3b subunit 1.
   
 0.999
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.