STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uacaUveal autoantigen with coiled-coil domains and ankyrin repeats. (1367 aa)    
Predicted Functional Partners:
apaf1
Apoptotic peptidase activating factor 1.
    
 0.765
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.742
casp9
Caspase 9.
    
 0.711
tmem59
Transmembrane protein 59.
   
  0.711
rhoh
Ras homolog family member H.
   
  0.706
rhoq
Ras homolog family member Q.
   
  0.706
nsfl1c
NSFL1 cofactor.
    
  0.702
LOC114851360
Transitional endoplasmic reticulum ATPase-like.
    
 0.690
vcp
Valosin containing protein.
    
 0.690
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
  0.623
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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