STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf2Transmembrane 9 superfamily member 2. (674 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
  
 0.885
cabcoco1
Ciliary associated calcium binding coiled-coil 1.
   
    0.749
ccdc115
Coiled-coil domain containing 115.
    
   0.579
plpp5
Phospholipid phosphatase 5.
    
   0.579
plpp4
Phospholipid phosphatase 4.
    
   0.579
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
   
  
 0.568
vps54
VPS54 subunit of GARP complex.
      
 0.547
LOC114842036
UTP--glucose-1-phosphate uridylyltransferase-like.
   
  
 0.540
fam234b
Family with sequence similarity 234 member B.
      
 0.534
sptssa
Serine palmitoyltransferase small subunit A.
      
 0.442
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.