STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcun1d5Defective in cullin neddylation 1 domain containing 5. (240 aa)    
Predicted Functional Partners:
ube2m
Ubiquitin conjugating enzyme E2 M.
    
 0.881
ube2f
Ubiquitin conjugating enzyme E2 F (putative).
    
 0.881
cul1
Cullin 1.
   
 0.879
LOC114868724
Cullin-3.
   
 0.868
CUL3
Cullin-3-like.
   
 0.868
LOC114860326
E3 ubiquitin-protein ligase RBX1.
   
 0.835
RBX1
E3 ubiquitin-protein ligase RBX1-like.
   
 0.835
cul2
Cullin 2.
   
 0.831
cacul1
CDK2 associated cullin domain 1.
    
 0.803
LOC114844574
NEDD8.
    
 0.799
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.