STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114867331LIM domain transcription factor LMO4.1-like. (170 aa)    
Predicted Functional Partners:
ldb1
LIM domain binding 1.
   
 0.640
ldb2
LIM domain binding 2.
   
 0.640
LOC114842103
LIM domain-binding protein 1-A-like.
   
 0.640
LOC114853410
Isopentenyl-diphosphate Delta-isomerase 1-like.
    
   0.620
LOC114857604
Serum response factor-like.
    
 0.533
srf
Serum response factor.
    
 0.533
rbbp8
RB binding protein 8, endonuclease.
    
 
 0.466
lhx4
LIM homeobox 4.
    
0.445
LHX3
LIM homeobox 3.
    
0.445
LOC114853406
Transcription factor E2-alpha-like.
    
  0.441
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.