STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptprmProtein tyrosine phosphatase receptor type M. (1523 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta 1.
    
 0.848
LOC114865743
Catenin beta-1-like.
    
 0.840
CTNND1
Catenin delta-1-like.
   
  0.806
LOC114862451
Catenin delta-1-like.
   
  0.806
ror2
Receptor tyrosine kinase like orphan receptor 2.
    
  0.664
ror1
Receptor tyrosine kinase like orphan receptor 1.
    
  0.664
PTK7
Protein tyrosine kinase 7 (inactive).
    
 0.658
grb2
Growth factor receptor bound protein 2.
   
 0.642
lrit3
Leucine rich repeat, Ig-like and transmembrane domains 3.
   
  0.640
lrit1
Leucine rich repeat, Ig-like and transmembrane domains 1.
   
  0.640
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.