lsamp protein (Betta splendens) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

lsamp

Limbic system associated membrane protein. (377 aa)

Predicted Functional Partners:

iglon5

0.612

PTK7

0.504

LOC114868260

0.480

slit2

0.480

LOC114864086

0.480

nyx

0.480

slit1

0.480

ptprm

0.463

erbb2

0.462

LOC114853312

0.462

Your Current Organism:

Betta splendens

NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114853312	PTK7	ENSBSLP00000012161	ENSBSLP00000006175	Melanoma receptor tyrosine-protein kinase-like.	Protein tyrosine kinase 7 (inactive).	0.627
LOC114853312	erbb2	ENSBSLP00000012161	ENSBSLP00000011993	Melanoma receptor tyrosine-protein kinase-like.	Erb-b2 receptor tyrosine kinase 2.	0.851
LOC114853312	iglon5	ENSBSLP00000012161	ENSBSLP00000026334	Melanoma receptor tyrosine-protein kinase-like.	IgLON family member 5.	0.462
LOC114853312	lsamp	ENSBSLP00000012161	ENSBSLP00000034434	Melanoma receptor tyrosine-protein kinase-like.	Limbic system associated membrane protein.	0.462
LOC114853312	ptprm	ENSBSLP00000012161	ENSBSLP00000034042	Melanoma receptor tyrosine-protein kinase-like.	Protein tyrosine phosphatase receptor type M.	0.510
LOC114864086	PTK7	ENSBSLP00000032149	ENSBSLP00000006175	Slit homolog 3 protein-like.	Protein tyrosine kinase 7 (inactive).	0.443
LOC114864086	iglon5	ENSBSLP00000032149	ENSBSLP00000026334	Slit homolog 3 protein-like.	IgLON family member 5.	0.480
LOC114864086	lsamp	ENSBSLP00000032149	ENSBSLP00000034434	Slit homolog 3 protein-like.	Limbic system associated membrane protein.	0.480
LOC114868260	PTK7	ENSBSLP00000011240	ENSBSLP00000006175	Slit homolog 1 protein-like.	Protein tyrosine kinase 7 (inactive).	0.443
LOC114868260	iglon5	ENSBSLP00000011240	ENSBSLP00000026334	Slit homolog 1 protein-like.	IgLON family member 5.	0.480
LOC114868260	lsamp	ENSBSLP00000011240	ENSBSLP00000034434	Slit homolog 1 protein-like.	Limbic system associated membrane protein.	0.480
PTK7	LOC114853312	ENSBSLP00000006175	ENSBSLP00000012161	Protein tyrosine kinase 7 (inactive).	Melanoma receptor tyrosine-protein kinase-like.	0.627
PTK7	LOC114864086	ENSBSLP00000006175	ENSBSLP00000032149	Protein tyrosine kinase 7 (inactive).	Slit homolog 3 protein-like.	0.443
PTK7	LOC114868260	ENSBSLP00000006175	ENSBSLP00000011240	Protein tyrosine kinase 7 (inactive).	Slit homolog 1 protein-like.	0.443
PTK7	erbb2	ENSBSLP00000006175	ENSBSLP00000011993	Protein tyrosine kinase 7 (inactive).	Erb-b2 receptor tyrosine kinase 2.	0.627
PTK7	iglon5	ENSBSLP00000006175	ENSBSLP00000026334	Protein tyrosine kinase 7 (inactive).	IgLON family member 5.	0.504
PTK7	lsamp	ENSBSLP00000006175	ENSBSLP00000034434	Protein tyrosine kinase 7 (inactive).	Limbic system associated membrane protein.	0.504
PTK7	nyx	ENSBSLP00000006175	ENSBSLP00000043610	Protein tyrosine kinase 7 (inactive).	Nyctalopin.	0.443
PTK7	ptprm	ENSBSLP00000006175	ENSBSLP00000034042	Protein tyrosine kinase 7 (inactive).	Protein tyrosine phosphatase receptor type M.	0.658
PTK7	slit1	ENSBSLP00000006175	ENSBSLP00000043767	Protein tyrosine kinase 7 (inactive).	Slit guidance ligand 1.	0.443