STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114855721RNA-binding protein 6-like. (1308 aa)    
Predicted Functional Partners:
utp6
UTP6 small subunit processome component.
    
 0.903
nol6
Nucleolar protein 6.
   
 0.900
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
  0.898
bysl
Bystin like.
    
 0.893
rrp36
Ribosomal RNA processing 36.
   
  0.889
ddx18
DEAD-box helicase 18.
    
 0.855
SUGP1
SURP and G-patch domain containing 1.
   
 0.850
ddx10
DEAD-box helicase 10.
    
 0.826
nop14
NOP14 nucleolar protein.
    
  0.818
rsl1d1
Ribosomal L1 domain containing 1.
   
 0.815
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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