STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114860842Protein N-lysine methyltransferase FAM173A-like. (232 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.754
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.749
lss
Lanosterol synthase.
    
 0.693
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 0.692
bysl
Bystin like.
   
 0.673
tsr1
TSR1 ribosome maturation factor.
   
  0.672
rps24
Ribosomal protein S24.
   
  0.659
mrps5
Mitochondrial ribosomal protein S5.
    
 0.657
rps2
Ribosomal protein S2.
    
 0.657
rps6
Ribosomal protein S6.
    
  0.646
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.