STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114860326E3 ubiquitin-protein ligase RBX1. (108 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.995
skp1
S-phase kinase associated protein 1.
   
 0.990
cul2
Cullin 2.
    
 0.989
cul1
Cullin 1.
    
 0.989
ddb1
Damage specific DNA binding protein 1.
    
 0.988
skp2
S-phase kinase associated protein 2.
    
 0.987
ENSBSLP00000034375
Elongin C paralog a.
   
 0.986
vhl
Von Hippel-Lindau tumor suppressor.
    
 0.984
LOC114865037
F-box/WD repeat-containing protein 11.
    
 0.984
arih1
Ariadne RBR E3 ubiquitin protein ligase 1.
    
 0.980
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.