STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp6Charged multivesicular body protein 6. (205 aa)    
Predicted Functional Partners:
snf8
SNF8 subunit of ESCRT-II.
    
 0.987
vps36
Vacuolar protein sorting 36 homolog.
 
  
 0.986
tm9sf1
Transmembrane 9 superfamily member 1.
    
 0.978
chmp2a
Charged multivesicular body protein 2A.
   
 0.965
uevld
UEV and lactate/malate dehyrogenase domains.
   
 0.963
chmp3
Charged multivesicular body protein 3.
    
 0.963
LOC114857124
Vacuolar protein sorting-associated protein 4A.
    
 0.960
VPS4B
Vacuolar protein sorting-associated protein 4B-like.
    
 0.958
vps4b
Vacuolar protein sorting 4 homolog B.
    
 0.958
vps28
VPS28 subunit of ESCRT-I.
   
 0.957
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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