STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
calhm2Calcium homeostasis modulator family member 2. (322 aa)    
Predicted Functional Partners:
c11h1orf109
Chromosome 11 C1orf109 homolog.
   
    0.824
rubcnl
Rubicon like autophagy enhancer.
   
    0.806
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.799
fbxo47
F-box protein 47.
   
    0.781
lix1
Limb and CNS expressed 1.
   
    0.729
LIX1L
Limb and CNS expressed 1 like.
   
    0.729
LOC114853904
Acyl-coenzyme A thioesterase 11-like.
   
    0.713
ACOT11
Acyl-coenzyme A thioesterase 11-like.
   
    0.713
mocs3
Molybdenum cofactor synthesis 3.
   
    0.704
lingo3
Leucine rich repeat and Ig domain containing 3.
   
    0.698
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.