STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114844937Ras-related protein Rab-18-B. (205 aa)    
Predicted Functional Partners:
rab3gap1
RAB3 GTPase activating protein catalytic subunit 1.
    
 0.825
rab3gap2
RAB3 GTPase activating non-catalytic protein subunit 2.
     
 0.795
LOC114862049
Rab GDP dissociation inhibitor beta-like.
   
 0.759
LOC114855822
Rab GDP dissociation inhibitor beta-like.
   
 0.759
LOC114858369
Rab GDP dissociation inhibitor alpha.
   
 0.759
LOC114869684
Rab proteins geranylgeranyltransferase component A 1-like.
     
 0.691
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.687
rabggtb
Rab geranylgeranyltransferase subunit beta.
     
 0.687
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.681
DCTN6
Dynactin subunit 6.
     
 0.664
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.