STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim9Tripartite motif containing 9. (716 aa)    
Predicted Functional Partners:
dcc
DCC netrin 1 receptor.
   
 
 0.769
neo1
Neogenin 1.
   
 
 0.769
LOC114852452
Immunoglobulin superfamily DCC subclass member 4-like.
   
 
 0.766
LOC114865037
F-box/WD repeat-containing protein 11.
    
 0.763
LOC114842926
F-box/WD repeat-containing protein 7-like.
    
 0.567
LOC114865998
Immunoglobulin superfamily DCC subclass member 3-like.
   
 
 0.566
LOC114843316
Immunoglobulin superfamily DCC subclass member 3-like.
   
 
 0.566
igdcc3
Immunoglobulin superfamily DCC subclass member 3.
   
 
 0.566
snap25
Synaptosome associated protein 25.
   
 
 0.561
LOC114852098
Synaptosomal-associated protein 25-B.
   
 
 0.561
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.