STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfkRiboflavin kinase. (170 aa)    
Predicted Functional Partners:
flad1
Flavin adenine dinucleotide synthetase 1.
   
 0.934
ephx2
Epoxide hydrolase 2.
  
 
 0.925
iyd
Iodotyrosine deiodinase.
    
 0.918
nudt12
Nudix hydrolase 12.
  
 
 0.899
trmt5
tRNA methyltransferase 5.
     
 0.897
icmt
Isoprenylcysteine carboxyl methyltransferase.
     
 0.891
LOC114860292
Phosphomannomutase 1-like.
   
 0.891
PMM1
Phosphomannomutase 1-like.
   
 0.891
LOC114852060
Phosphomannomutase 2-like.
   
 0.891
pudp
Pseudouridine 5'-phosphatase.
  
 
 0.888
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.