STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114843949Afadin- and alpha-actinin-binding protein-like. (611 aa)    
Predicted Functional Partners:
LOC114849151
Afadin-like.
    
  0.855
ssx2ip
SSX family member 2 interacting protein.
  
  
 
0.843
actn3
Actinin alpha 3.
     
 0.743
actn4
Actinin alpha 4.
     
 0.743
LOC114841840
Alpha-actinin-2.
     
 0.743
actn1
Actinin alpha 1.
     
 0.743
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.693
alkbh7
alkB homolog 7.
 
   
  0.661
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.525
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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