STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps26cVPS26 endosomal protein sorting factor C. (297 aa)    
Predicted Functional Partners:
vps29
VPS29 retromer complex component.
   
 0.990
vps35
VPS35 retromer complex component.
    
 0.949
ccdc22
Coiled-coil domain containing 22.
   
 
 0.933
ccdc93
Coiled-coil domain containing 93.
    
 
 0.928
commd1
Copper metabolism domain containing 1.
    
 
 0.908
vps35l
VPS35 endosomal protein sorting factor like.
   
 0.838
commd2
COMM domain containing 2.
    
 
 0.835
dennd10
DENN domain containing 10.
    
 
 0.808
vps26a
VPS26, retromer complex component A.
     
0.746
vps26b
VPS26, retromer complex component B.
     
0.746
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.