STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt22Nudix hydrolase 22. (355 aa)    
Predicted Functional Partners:
trpt1
tRNA phosphotransferase 1.
 
 
  
 0.767
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.620
gtf2h4
General transcription factor IIH subunit 4.
   
 
  0.587
bckdk
Branched chain keto acid dehydrogenase kinase.
   
  
 0.578
nudt17
Nudix hydrolase 17.
      
 0.554
nudt12
Nudix hydrolase 12.
    
 
 0.553
trabd
TraB domain containing.
      
 0.551
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
    0.550
nudt5
Nudix hydrolase 5.
      
 0.548
nudt14
Nudix hydrolase 14.
      
 0.546
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.