STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc12Coiled-coil domain containing 12. (194 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40.
    
  0.999
prpf19
pre-mRNA processing factor 19.
    
  0.996
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
  0.995
cdc5l
Cell division cycle 5 like.
    
  0.994
syf2
SYF2 pre-mRNA splicing factor.
    
  0.992
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
  0.990
ppil3
Peptidylprolyl isomerase like 3.
   
 0.989
ppil1
Peptidylprolyl isomerase like 1.
   
 0.988
srrm1
Serine and arginine repetitive matrix 1.
     
 0.988
ppil2
Peptidylprolyl isomerase like 2.
   
 0.986
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.