STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114864639Ankyrin repeat and SOCS box protein 12-like. (319 aa)    
Predicted Functional Partners:
ENSBSLP00000034375
Elongin C paralog a.
    
 0.761
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.742
rnf7
Ring finger protein 7.
    
 0.740
pikfyve
Phosphoinositide kinase, FYVE-type zinc finger containing.
    
 0.736
asb6
Ankyrin repeat and SOCS box containing 6.
  
  
 0.735
commd8
COMM domain containing 8.
   
  0.732
LOC114844574
NEDD8.
    
  0.719
LOC114867597
NEDD8-like.
    
  0.719
commd1
Copper metabolism domain containing 1.
    
  0.709
CUL5
Cullin-5-like.
    
 0.707
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.