STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
knl1Kinetochore scaffold 1. (1795 aa)    
Predicted Functional Partners:
xrcc3
X-ray repair cross complementing 3.
   
 0.998
ENSBSLP00000034562
BRCA2 DNA repair associated.
   
 0.989
bub1b
BUB1 mitotic checkpoint serine/threonine kinase B.
   
 0.987
ENSBSLP00000023484
annotation not available
   
 0.984
rad51
RAD51 recombinase.
   
 0.982
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.980
rad51b
RAD51 paralog B.
   
 0.977
rad51d
RAD51 paralog D.
   
 0.977
ENSBSLP00000030651
MIS12 kinetochore complex component.
   
 0.965
nuf2
NUF2 component of NDC80 kinetochore complex.
   
 0.964
Your Current Organism:
Betta splendens
NCBI taxonomy Id: 158456
Other names: B. splendens, Siamese fighting fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.